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Step 1 · Biochemistry

Vitamins: Water & Fat Soluble

Cofactors, deficiency syndromes, and toxicities

Biochemistry·Nutrition·4 min read·9 high-yield points·Reviewed by Veli Bakalov, MD @HemeOncBuddy
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Water-soluble vs fat-soluble

Water-soluble (B complex and C). B1, B2, B3, B5, B6, B7, B9 (folate), B12, and C are poorly stored and wash out in urine, so deficiencies are common and toxicity is rare. The exceptions to washout are B12 and folate, which are stored in the liver (B12 stores last years; folate stores only months).

Fat-soluble (A, D, E, K). Absorption requires bile and intact fat digestion, and these vitamins accumulate in fat, so toxicity is more common. Deficiencies accompany fat malabsorption such as cystic fibrosis and celiac disease.

B vitamins and vitamin C

Water-soluble vitamins
VitaminActive form / roleDeficiencyClassic causes / notes
B1 thiamineTPP: PDH, α-KG dehydrogenase, transketolase, branched-chain ketoacid dehydrogenaseWernicke-Korsakoff, beriberiAlcoholism, malnutrition; give before glucose
B2 riboflavinFAD, FMN (redox reactions)Cheilosis, corneal vascularization (the 2 C's)Malnutrition
B3 niacinNAD+, NADP+; can be made from tryptophan (needs B6)Pellagra: diarrhea, dermatitis (Casal necklace), dementiaHartnup disease, carcinoid syndrome, isoniazid; excess causes flushing
B5 pantothenateCoenzyme ADermatitis, enteritis, alopecia (rare)Rarely deficient
B6 pyridoxinePLP: transamination, decarboxylation, ALA synthase (heme), neurotransmitter synthesisPeripheral neuropathy, convulsions, sideroblastic anemiaIsoniazid, oral contraceptives
B7 biotinCarboxylases (pyruvate, acetyl-CoA, propionyl-CoA)Dermatitis, alopecia, enteritis (rare)Large amounts of raw egg white (avidin), antibiotics
C ascorbic acidHydroxylates proline and lysine in collagen; reduces Fe3+ to Fe2+ for absorption; dopamine → norepinephrineScurvyPoor diet (tea-and-toast)

Thiamine and the alcoholic patient. Deficiency causes Wernicke encephalopathy — confusion, ophthalmoplegia, and ataxia, with damage to the mammillary bodies — which can progress to Korsakoff syndrome, adding confabulation and memory loss. Beriberi comes in a dry form (symmetric peripheral neuropathy with muscle wasting) and a wet form (dilated cardiomyopathy with high-output heart failure and edema).

Give thiamine BEFORE glucose: a glucose load consumes the remaining thiamine and can precipitate acute Wernicke encephalopathy.

Niacin. Carcinoid syndrome diverts tryptophan into serotonin, Hartnup disease blocks tryptophan absorption, and isoniazid depletes the B6 needed to convert tryptophan into niacin — all three can cause pellagra. High-dose niacin used for dyslipidemia causes facial flushing.

Scurvy. Without vitamin C, prolyl and lysyl hydroxylases cannot stabilize the collagen triple helix: swollen, bleeding gums, perifollicular hemorrhages, corkscrew hairs, poor wound healing, and easy bruising.

Folate vs B12

A shared pathway. Folate (as tetrahydrofolate, THF) carries one-carbon units for DNA synthesis. B12 (cobalamin) is the cofactor for methionine synthase, which moves a methyl group from methyl-THF to homocysteine, regenerating THF and methionine. B12 also serves methylmalonyl-CoA mutase, which converts methylmalonyl-CoA to succinyl-CoA. Either deficiency stalls DNA synthesis and causes megaloblastic anemia, but only B12 deficiency raises methylmalonic acid (MMA) and damages myelin.

Folate vs B12 deficiency
FeatureFolate deficiencyB12 deficiency
Common causesAlcoholism, pregnancy, methotrexate, phenytoin, trimethoprimPernicious anemia, ileal disease, Diphyllobothrium latum, vegan diet
BloodMacrocytic megaloblastic anemia, hypersegmented neutrophilsSame
NeurologicNoneSubacute combined degeneration: dorsal columns, lateral corticospinal and spinocerebellar tracts
Homocysteine↑↑
Methylmalonic acidNormal↑
Folate deficiency is the most common vitamin deficiency in the US.

Periconceptional folate prevents fetal neural tube defects. Folate given alone to a B12-deficient patient can correct the anemia while the neurologic damage progresses.

Fat-soluble vitamins

Fat-soluble vitamins
VitaminKey rolesDeficiencyExcess / clinical use
A (retinol/retinal)Vision, epithelial differentiation, immunityNight blindness, dry eyes, Bitot spotsTeratogen (isotretinoin), pseudotumor cerebri; used for measles and APL
D (calcitriol)↑ intestinal Ca and phosphate absorption; bone mineralizationRickets (children), osteomalacia (adults)Hypercalcemia; excess production in sarcoidosis
E (tocopherol)Antioxidant protecting RBC membranes and neuronsHemolytic anemia; posterior column and spinocerebellar syndromePotentiates warfarin
Kγ-Carboxylation of factors II, VII, IX, X and proteins C and SBleeding, including neonatal hemorrhageGiven to reverse warfarin

Vitamin A. All-trans retinoic acid (ATRA) is the treatment for acute promyelocytic leukemia (APL; AML M3, t(15;17)).

Vitamin D activation. Serum 25-OH D, the storage form, is what is measured to judge vitamin D status. In sarcoidosis and other granulomatous diseases, macrophages carry out the 1α-hydroxylation themselves, producing excess calcitriol and hypercalcemia.

  1. Skin: 7-dehydrocholesterol → D3Requires UV light
  2. Diet: D2 or D3Absorbed in the gut
  3. Liver: 25-hydroxylase25-OH D, the storage form
  4. Kidney: 1α-hydroxylase1,25-(OH)2 D (calcitriol), the active form; stimulated by PTH
Vitamin D activation

Vitamin E. Deficiency mimics B12 deficiency neurologically (posterior columns, spinocerebellar tracts) but WITHOUT megaloblastic anemia or a raised MMA — and it adds hemolysis.

Vitamin K. It is the cofactor for γ-glutamyl carboxylase; epoxide reductase recycles it and is warfarin's target. Newborns have sterile guts and low vitamin K stores, so without prophylaxis they can bleed (intracranial, umbilical) with both PT and PTT prolonged — hence IM vitamin K at birth. Long courses of broad-spectrum antibiotics can also cause deficiency.