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Step 1 · Biochemistry

Classic Genetic Disorders

Repeat expansions, neurocutaneous syndromes, and the trisomy triad

Biochemistry·Genetics·4 min read·9 high-yield points·Reviewed by Veli Bakalov, MD @HemeOncBuddy
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Trinucleotide repeat expansions

Shared behavior. In these four disorders an unstable three-base repeat lengthens as it passes through the germline, so all show anticipation — earlier onset and more severe disease in successive generations. Mnemonic "Try hunting for my fried eggs": Huntington (CAG), Myotonic dystrophy (CTG), Friedreich ataxia (GAA), Fragile X (CGG).

The repeat-expansion four
DisorderRepeat, geneInheritanceHallmarks
Huntington diseaseCAG, HTT (chromosome 4)ADOnset age 30–50: chorea, dementia, depression; caudate atrophy
Myotonic dystrophyCTG, DMPKADMyotonia (trouble releasing a grip), cataracts, frontal balding, testicular atrophy, arrhythmia
Friedreich ataxiaGAA, frataxin/FXN (chromosome 9)ARChildhood staggering ataxia, pes cavus, kyphoscoliosis, diabetes, hypertrophic cardiomyopathy
Fragile X syndromeCGG, FMR1X-linked dominantIntellectual disability, long face, large jaw and ears, post-pubertal macroorchidism, mitral valve prolapse

Huntington disease. The CAG expansion adds a polyglutamine tract to huntingtin. GABAergic neurons of the caudate die, so the caudate atrophies and the lateral ventricles enlarge. Neurotransmitter pattern: ↓GABA, ↓ACh, ↑dopamine. Memory aid: CAG = Caudate, Anticipation, Glutamine.

Fragile X syndrome. The CGG expansion triggers hypermethylation that silences FMR1. It is the most common inherited cause of intellectual disability; Down syndrome is the most common genetic cause overall. Premutation carriers (intermediate repeat lengths) risk primary ovarian insufficiency and fragile X–associated tremor/ataxia syndrome (FXTAS).

Friedreich ataxia. Frataxin handles iron inside mitochondria; its loss injures neurons and cardiomyocytes. Hypertrophic cardiomyopathy is the usual cause of death.

Marfan syndrome

Defect. Autosomal dominant FBN1 mutation (chromosome 15) produces defective fibrillin-1, the glycoprotein scaffold on which elastin is laid down.

Findings. Tall stature with long extremities, arachnodactyly, hyperflexible joints, pectus deformity, upward lens subluxation, and mitral valve prolapse. Cystic medial degeneration of the aorta causes aortic root dilation and dissection — the main threat to life, classically a tall young man with sudden chest and back pain.

Lens direction: Marfan dislocates up and out; homocystinuria (marfanoid habitus plus intellectual disability and thrombosis) dislocates down and in.

Neurocutaneous syndromes

Common thread. NF1, NF2, tuberous sclerosis, and von Hippel-Lindau are autosomal dominant tumor-suppressor disorders that combine skin or eye findings with nervous system and visceral tumors.

Neurocutaneous syndromes
SyndromeGene / protein (chromosome)Hallmark findings
NF1 (von Recklinghausen)NF1 / neurofibromin, a RAS-GAP (17)Café-au-lait spots, cutaneous neurofibromas, Lisch nodules (iris hamartomas), optic gliomas, axillary/inguinal freckling, pheochromocytoma
NF2NF2 / merlin (22)Bilateral vestibular schwannomas (acoustic neuromas) with hearing loss and tinnitus, meningiomas, ependymomas, juvenile cataracts
Tuberous sclerosisTSC1 / hamartin or TSC2 / tuberinAsh-leaf spots, facial angiofibromas (adenoma sebaceum), shagreen patches, cortical tubers, cardiac rhabdomyoma, renal angiomyolipoma, seizures, intellectual disability
Von Hippel-LindauVHL (3p)Cerebellar and retinal hemangioblastomas, bilateral clear cell renal cell carcinoma, pheochromocytoma, multiple cysts
Chromosome hooks: "von Recklinghausen" has 17 letters (NF1); NF2 → 22; VHL has 3 letters → chromosome 3.

NF1. Loss of neurofibromin, a GTPase-activating protein, leaves RAS switched on. Penetrance is essentially complete, but expressivity varies widely within families.

Tuberous sclerosis. Hamartin and tuberin normally restrain mTOR signaling, so their loss seeds hamartomas in many organs, with marked variable expressivity. Ash-leaf spots plus cardiac rhabdomyoma plus seizures in an infant point to tuberous sclerosis.

Von Hippel-Lindau. The VHL protein normally targets hypoxia-inducible factor for degradation; losing it mimics constant hypoxia.

  1. VHL lost (chromosome 3p)Tumor suppressor gone
  2. HIF-1α accumulatesNo longer degraded
  3. VEGF and PDGF riseAngiogenesis
  4. TumorsHemangioblastomas, clear cell RCC, pheochromocytoma
VHL tumor suppressor loss

Autosomal trisomies and prenatal screening

Down syndrome (trisomy 21). The most common trisomy among live births and the most common genetic cause of intellectual disability. Most cases arise from meiotic nondisjunction, whose risk rises with advanced maternal age; a minority result from Robertsonian translocation or mosaicism. Associations: duodenal atresia ("double bubble," bilious vomiting), Hirschsprung disease, AV septal (endocardial cushion) defect, early-onset Alzheimer disease (extra APP gene on chromosome 21), and increased ALL and AML risk.

Autosomal trisomies
FeatureTrisomy 21 (Down)Trisomy 18 (Edwards)Trisomy 13 (Patau)
Signature findingsFlat facies, epicanthal folds, single palmar creaseMicrognathia, clenched fists with overlapping fingers, rocker-bottom feet, low-set earsCleft lip/palate, holoprosencephaly, polydactyly, cutis aplasia, microphthalmia
Heart / GIAV septal defect; duodenal atresia, HirschsprungCongenital heart diseaseCongenital heart disease
SurvivalInto adulthoodDeath usually by age 1Death usually by age 1
Serum screeningQuad: ↓AFP, ↑β-hCG, ↓estriol, ↑inhibin AQuad: ↓AFP, ↓β-hCG, ↓estriol, normal or ↓inhibin AFirst trimester: ↓PAPP-A, ↓free β-hCG
Memory aid: election age 18 = Edwards (clenched fists); puberty 13 = Patau (cleft, holoprosencephaly).

Maternal serum AFP. Elevated AFP points to an open neural tube defect or an abdominal wall defect (after excluding wrong dates or multiple gestation). Low AFP occurs in Down and Edwards syndromes.

Chromosome 15 imprinting

Prader-Willi vs Angelman. Both involve the imprinted 15q region, where only one parent's copy is active. Prader-Willi results from loss of the paternal genes: neonatal hypotonia and poor feeding, then hyperphagia and obesity, hypogonadism, and intellectual disability. Angelman results from loss of the maternal gene UBE3A: ataxia, seizures, and inappropriate laughter (the "happy puppet"). Either can arise from a deletion or from uniparental disomy — maternal disomy gives Prader-Willi, paternal disomy gives Angelman.

Prader-Willi = Paternal loss; Angelman = mAternal loss.